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Lyrebird: Toward Robust and Generalizable 3D Molecular Conformer Generation via Equivariant Flows
Vedanth M. Nilabh, Elias L Mann
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
LieFlower: Controlling Protein Dynamics via Lie-Guided Discrete Flows
Manvitha Ponnapati, Tong Chen, Yinuo Zhang, Pranam Chatterjee
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
A novel combinatorial high-throughput assay of small molecules and their protein targets
Simon P Shen, Brian B. Liau
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Synthesis-constrained discrete diffusion for ionizable lipid generation
Rohin Maganti, Rahul Maganti, Mohamad-Gabriel Alameh
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
JUST ADD STRUCTURE: PROTEIN LANGUAGE MODELS COMBINED WITH STRUCTURAL EQUIVARIANCE EXCEL AT PROTEIN TASKS
Qurat ul ain, Yee Whye Teh, Carlos Outeiral, Matteo Cagiada, Charlotte Deane
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
PMO-Dock: Benchmarking Docking, Specificity and Generalization in Molecular Optimization
Gor Simonyan, Tatevik Abrahamyan, Narek Abelyan, Tigran Fahradyan, Hrant Khachatrian
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Comparing Selectivity-Aware Generative AI and Library Screening in a Virtual DMT Cycle
Amit Kadan, Erika Lloyd, Andrew Wildman, Leo Zhang, Steffen Ridderbusch
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Conditional Monte Carlo Tree Diffusion for Designing Cell-Type-Specific and Biologically Faithful Regulatory DNA
Animesh Awasthi, Raphael Bednarsky, Moritz Schaefer, Christoph Bock
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
TOWARDS UNDERSTANDING HYBRID PROTEIN LANGUAGE MODEL DESIGN: A SYSTEMATIC ABLATION AND INTERPRETABILITY STUDY
Yash Semlani, Nauman Javed, Frederick Hoffman, Krithik Ramesh
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
A Unified Computational Framework for the Integration of AI Models in Structure-Based Drug Design
Luna Pianesi, Alexander Schoenhuth
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Synthetic RNA Evolution Enables Accurate Alignment-Free 3D Structure Prediction
Jörg K.H. Franke, Iris K. Tennie, Michael Uhl, Ryan Koksal, Dominika Matus, Frank Hutter, Rolf Backofen, Frederic Runge
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Inference-time optimization for experiment-grounded protein ensemble generation
Sai Advaith Maddipatla, Anar Rzayev, Marco Pegoraro, Ailie Marx, Martin Pacesa, Paul Schanda, Sanketh Vedula, Alexander Bronstein
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Biologically-Grounded Multi-Encoder Architectures as Developability Oracles for Antibody Design
Simon J. Crouzet
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
CHIMERA-Bench: A Benchmark Dataset for Epitope-Specific Antibody Design
Mansoor Ahmed, Nadeem Taj, Imdad Ullah Khan, Hemanth Venkateswara, Murray Patterson
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
PRISM: A Hybrid Diffusion-Reinforcement Learning Framework for 3D Structure-based De Novo Design
Sanaz Kazeminia, Lewis R. Vidler, Pushkar G. Ghanekar, Nele P Quast, Garrett M Morris
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
FoldSAE: Learning To Steer Protein Folding Through Sparse Representations
Wojciech Zarzecki, Paulina Szymczak, Ewa Szczurek, Kamil Deja
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Generalized Multi-State Protein Design with AlphaFold3
Xiwei Cheng, Pengkang Guo, Seonghwan Seo, Casper A. Goverde, Wengong Jin
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
AF3Design: Selectivity–Aware Nanobody Design with AlphaFold3
Anisha Parsan, Robin Pan, Caroline Uhler, Wengong Jin
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Towards A Generative Protein Evolution Machine with DPLM-Evo
Xinyou Wang, Liang Hong, Jiasheng Ye, Zaixiang Zheng, Shujian Huang, Quanquan Gu
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Search-Based Inference-Time Scaling for All-Atom Protein Binder Design
Kiwoong Yoo, Soorin Yim, Kyungwook Lee, Sungjoon Park, Jaehyeong Kong, Doyeong Hwang, Jongseong Jang, Kiyoung Kim
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Antibody design with steerable discrete diffusion
Hugh Yeh, Niksa Praljak, Zhijie Chen, Thomas M. Walsh, Juan L. Mendoza, Jun Huang, Andrew Ferguson
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
From Structure to Function: Preference Alignment for Function-Aware Protein Inverse Folding
Tamatgar Nilufer, Soobin Park, Yinghua Yao, Xixian Chen, Yuangang Pan
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Scalable Inference-Time Annealing for Continuous Normalizing Flows
Daniel Peñaherrera, Rishal Aggarwal, David Ryan Koes
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Machine learning-guided design of biomolecular condensates in an automated laboratory
Peiran Jiang, Weifeng Wu, Simran Sodhi, Huaiying Zhang, Jose Lugo-Martinez
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone
Folding scFv--Antigen Complexes at Scale
Ravi Shah, Jeffrey Ouyang-Zhang, Zachary Cohen, Maria Rosaria Briglia, Chi Zhang, Adam Klivans, Daniel Jesus Diaz
- Published: 02 Mar 2026, Last Modified: 26 May 2026
- GEM 2026
- Readers: Everyone

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