NeurIPS 2024 Workshop FM4Science Submissions

A Foundation Model for Metagenomic Sequences
Ollie Liu, Sami Jaghouar, Johannes Hagemann, Jeff Kaufman, Willie Neiswanger
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Understanding Protein-DNA Interactions by Paying Attention to Protein and Genomics Foundation Models
Dhruva Rajwade, Erica Wang, Aryan Satpathy, Alexander Brace, Hongyu Guo, Arvind Ramanathan, Shengchao Liu, Anima Anandkumar
- Published: 11 Oct 2024, Last Modified: 07 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
PROSE-FD: A Multimodal PDE Foundation Model for Learning Multiple Operators for Forecasting Fluid Dynamics
Yuxuan Liu, Jingmin Sun, Xinjie He, Griffin Pinney, Zecheng Zhang, Hayden Schaeffer
- Published: 11 Oct 2024, Last Modified: 09 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Solving Out-of-Distribution Challenges in Optical Foundation Models using Self-Improving Data Augmentation
Mingqian Ma, Taigao Ma, L. Jay Guo
- Published: 11 Oct 2024, Last Modified: 13 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Leveraging foundation models for data-limited ecological applications
Kyle Doherty, Max A Gurinas, Erik Samsoe, Charles Casper, Beau G Larkin, Philip W. Ramsey, Brandon Trabucco, Russ Salakhutdinov
- Published: 11 Oct 2024, Last Modified: 11 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
CLOUD: A Scalable Scientific Foundation Model for Crystal Representation Learning
Changwen Xu, Shang Zhu, Venkatasubramanian Viswanathan
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Uncertainty and Generalizability in Foundation Models for Earth Observation
Raúl Ramos-Pollán, Freddie Kalaitzis, Karthick Panner Selvam
- Published: 11 Oct 2024, Last Modified: 10 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Scientific Knowledge Graph and Ontology Generation using Open Large Language Models
Alexandru Oarga, Matthew Hart, Andres M Bran, Magdalena Lederbauer, Philippe Schwaller
- Published: 11 Oct 2024, Last Modified: 11 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
LLM Agent for Fire Dynamics Simulations
Leidong Xu, Danyal Mohaddes, Yi Wang
- Published: 11 Oct 2024, Last Modified: 11 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
BarcodeMamba: State Space Models for Biodiversity Analysis
Tiancheng Gao, Graham W. Taylor
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
DiffBatt: A Diffusion Model for Battery Degradation Prediction and Synthesis
Hamidreza Eivazi, André Hebenbrock, Raphael Ginster, Steffen Blömeke, Stefan Wittek, Christoph Hermann, Thomas S. Spengler, Thomas Turek, Andreas Rausch
- Published: 11 Oct 2024, Last Modified: 08 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Improving generalisability of 3D binding affinity models in low data regimes
Julia Buhmann, Ward Haddadin, Alan Bilsland, Lukáš Pravda, Hagen Triendl
- Published: 11 Oct 2024, Last Modified: 07 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Bridging biomolecular modalities for knowledge transfer in bio-language models
Mangal Prakash, Artem Moskalev, Peter DiMaggio Jr., Steven Combs, Tommaso Mansi, Justin Scheer, Rui Liao
- Published: 11 Oct 2024, Last Modified: 02 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Stylish and Functional: Guided Interpolation Subject to Physical Constraints
Yan-Ying Chen, Nikos Arechiga, Chenyang Yuan, Matthew K Hong, Matthew Klenk, Charlene C. Wu
- Published: 11 Oct 2024, Last Modified: 08 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Scalable Universal T-Cell Receptor Embeddings from Adaptive Immune Repertoires
Paidamoyo Chapfuwa, Ilker Demirel, Lorenzo Pisani, Javier Zazo, Elon Portugaly, Jabran Zahid, Julia Greissl
- Published: 11 Oct 2024, Last Modified: 08 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
DeepOSets: Non-Autoregressive In-Context Learning of Supervised Learning Operators
Shao-Ting Chiu, Junyuan Hong, Ulisses Braga-Neto
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
SciRIFF: A Resource to Enhance Language Model Instruction-Following over Scientific Literature
David Wadden, Kejian Shi, Jacob Morrison, Aakanksha Naik, Shruti Singh, Nitzan Barzilay, Kyle Lo, Tom Hope, Luca Soldaini, Zejiang Shen, Doug Downey, Hannaneh Hajishirzi, Arman Cohan
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Cell ontology guided transcriptome foundation model
Xinyu Yuan, Zhihao Zhan, Zuobai Zhang, Manqi Zhou, Jianan Zhao, Boyu Han, Yue Li, Jian Tang
- Published: 11 Oct 2024, Last Modified: 02 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Can we pre-train ICL-based SFMs for the zero-shot inference of the 1D CDR problem with noisy data?
Mingu Kang, Dongseok Lee, Woojin Cho, Kookjin Lee, Anthony Gruber, Nathaniel Trask, Youngjoon Hong, Noseong Park
- Published: 11 Oct 2024, Last Modified: 11 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Bio-xLSTM: Generative modeling, representation and in-context learning of biological and chemical sequences
Niklas Schmidinger, Lisa Schneckenreiter, Philipp Seidl, Johannes Schimunek, Pieter-Jan Hoedt, Johannes Brandstetter, Andreas Mayr, Sohvi Luukkonen, Sepp Hochreiter, Günter Klambauer
- Published: 11 Oct 2024, Last Modified: 11 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Survey: Adaptive Physics-informed Neural Networks
Edgar Torres, Mathias Niepert
- Published: 11 Oct 2024, Last Modified: 08 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Vision foundation models: can they be applied to astrophysics data?
Erica Lastufka, Mariia Drozdova, Vitaliy Kinakh, Slava Voloshynovskiy
- Published: 11 Oct 2024, Last Modified: 12 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
SciLitLLM: How to Adapt LLMs for Scientific Literature Understanding
Sihang Li, Jin Huang, Jiaxi Zhuang, Yaorui Shi, Xiaochen Cai, Mingjun Xu, Xiang Wang, Linfeng Zhang, Guolin Ke, Hengxing Cai
- Published: 11 Oct 2024, Last Modified: 03 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
Assessing interaction recovery of predicted protein-ligand poses
David Errington, Constantin Schneider, Cédric Bouysset, Frederic A Dreyer
- Published: 11 Oct 2024, Last Modified: 09 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone
BiRNA-BERT: Adaptive Tokenization for Efficient RNA Language Modeling
Md Toki Tahmid, Haz Sameen Shahgir, Sazan Mahbub, Yue Dong, Md Shamsuzzoha Bayzid
- Published: 11 Oct 2024, Last Modified: 19 Nov 2024
- Neurips 2024 Workshop FM4Science Poster
- Readers: Everyone